JOURNAL OF SHANDONG UNIVERSITY(NATURAL SCIENCE) ›› 2024, Vol. 59 ›› Issue (7): 85-94.doi: 10.6040/j.issn.1671-9352.1.2023.064
• Review • Previous Articles Next Articles
Xingyu HUANG1,2(),Mingyu ZHAO1,3,Ziyu LYU1,2,*()
CLC Number:
1 | GONG Liyu, CHENG Qiang. Exploiting edge features for graph neural networks[C]//2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR). Long Beach: IEEE, 2019: 9203-9211. |
2 | VELIČKOVIĆ P, CUCURULL G, CASANOVA A, et al. Graph attention networks[EB/OL]. (2017-12-20)[2023-11-24]. http://arxiv.org/abs/1710.10903. |
3 | FAN Wenqi, MA Yao, LI Qing, et al. Graph neural networks for social recommendation[C]//The World Wide Web Conference. San Francisco: ACM, 2019: 417-426. |
4 | CHAUDHARY A, MITTAL H, ARORA A. Anomalydetection using graph neural networks[C]//2019 International Conference on Machine Learning, Big Data, Cloud and Parallel Computing (COMITCon). Faridabad: IEEE, 2019: 346-350. |
5 |
GUO Zhiwei , WANG Heng . A deep graph neural network-based mechanism for social recommendations[J]. IEEE Transactions on Industrial Informatics, 2021, 17 (4): 2776- 2783.
doi: 10.1109/TII.2020.2986316 |
6 |
RATHI P C , LUDLOW R F , VERDONK M L . Practical high-quality electrostatic potential surfaces for drug discovery using a graph-convolutional deep neural network[J]. Journal of Medicinal Chemistry, 2020, 63 (16): 8778- 8790.
doi: 10.1021/acs.jmedchem.9b01129 |
7 | XIONG Zhaoping , WANG Dingyan , LIU Xiaohang , et al. Pushing the boundaries of molecular representation for drug discovery with the graph attention mechanism[J]. Journal of Medicinal Chemistry, 2019, 63 (16): 8749- 8760. |
8 |
YE Xianbin , GUAN Quanlong , LUO Weiqi , et al. Molecular substructure graph attention network for molecular property identification in drug discovery[J]. Pattern Recognition, 2022, 128, 108659.
doi: 10.1016/j.patcog.2022.108659 |
9 | PETRONI F, ROCKTÄSCHEL T, LEWIS P, et al. Language models as knowledge bases?[EB/OL]. (2019-09-03)[2023-11-24]. http://arxiv.org/abs/1909.01066. |
10 | DEFFERRARD M, BRESSON X, VANDERGHEYNST P. Convolutional neural networks on graphs with fast localized spectral filtering[C]//Proceedings of the 30th International Conference on Neural Information Processing Systems. Barcelona: ACM, 2016: 3844-3852. |
11 | ZHU H, KONIUSZ P. Simple spectral graph convolution[C/OL]//International Conference on Learning Representations. Vienna, Austria, 2021: 1-15. https://openreview.net/pdf?id=CYO5T-YjWZV. |
12 | HE Xiangnan, DENG Kuan, WANG Xiang, et al. LightGCN: simplifying and powering graph convolution network for recommendation[C]//Proceedings of the 43rd International ACM SIGIR Conference on Research and Development in Information Retrieval. [S. l. ]: ACM, 2020: 639-648. |
13 | HAMILTON W L, YING R, LESKOVEC J. Inductive representation learning on large graphs[C]//Proceedings of the 31st International Conference on Neural Information Processing Systems. California: ACM, 2017: 1025-1035. |
14 | XU K, HU W H, LESKOVEC J, et al. How powerful are graph neural networks?[EB/OL]. (2018-12-26)[2023-11-24]. http://arxiv.org/abs/1810.00826. |
15 | BELINKOV Y, DURRANI N, DALVI F, et al. What do neural machine translation models learn about morphology?[EB/OL]. (2017-05-15)[2023-11-24]. http://arxiv.org/abs/1704.03471. |
16 | ADI Y, KERMANY E, BELINKOV Y, et al. Fine-grained analysis of sentence embeddings using auxiliary prediction tasks[EB/OL]. (2016-09-11)[203-11-24]. http://arxiv.org/abs/1608.04207. |
17 | CONNEAU A, KRUSZEWSKI G, LAMPLE G, et al. What you can cram into a single vector: probing sentence embeddings for linguistic properties[EB/OL]. (2018-05-03)[2023-11-24]. http://arxiv.org/abs/1805.01070. |
18 |
HUPKES D , VELDHOEN S , ZUIDEMA W . Visualisation and 'diagnostic classifiers' reveal how recurrent and recursive neural networks process hierarchical structure[J]. Journal of Artificial Intelligence Research, 2018, 61, 907- 926.
doi: 10.1613/jair.1.11196 |
19 | PIMENTEL T, VALVODA J, MAUDSLAY R H, et al. Information-theoretic probing for linguistic structure[EB/OL]. (2020-04-07)[2023-11-24]. http://arxiv.org/abs/2004.03061. |
20 | WU Zhiyong, CHEN Yun, KAO Ben, et al. Perturbed masking: parameter-free probing for analyzing and interpreting BERT[EB/OL]. (2020-04-30)[2021-11-24]. http://arxiv.org/abs/2004.14786. |
21 | HEWITT J, LIANG P. Designing and interpreting probes with control tasks[EB/OL]. (2019-09-08)[2023-11-24]. http://arxiv.org/abs/1909.03368. |
22 | HEWITT J, MANNING C D. A structural probe for finding syntax in word representations[C]//Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Volume 1 (Long and Short Papers). Minnesota: ACL, 2019: 4129-4138. |
23 | YANG Z, COHEN W, SALAKHUDINOV R. Revisiting semi-supervised learning with graph embeddings[C]//International Conference on Machine Learning. New York: ACL, 2016: 40-48. |
24 | HARPER F M , KONSTAN J A . The MovieLens datasets: history and context[J]. ACM Transactions on Interactive Intelligent Systems, 2015, 5 (4): 1- 19. |
25 | KHOSLA P , TETERWAK P , WANG C , et al. Supervised contrastive learning[J]. Advances in Neural Information Processing Systems, 2020, 33, 18661- 18673. |
26 |
ZITNIK M , LESKOVEC J . Predicting multicellular function through multi-layer tissue networks[J]. Bioinformatics, 2017, 33 (14): i190- i198.
doi: 10.1093/bioinformatics/btx252 |
27 |
BORGWARDT K M , ONG C S , SCHÖNAUER S , et al. Protein function prediction via graph kernels[J]. Bioinformatics, 2005, 21 (Suppl 1): i47- i56.
doi: 10.1093/bioinformatics/bti1007 |
28 |
DEBNATH A K , LOPEZ DE COMPADRE R L , DEBNATH G , et al. Structure-activity relationship of mutagenic aromatic and heteroaromatic nitro compounds. Correlation with molecular orbital energies and hydrophobicity[J]. Journal of Medicinal Chemistry, 1991, 34 (2): 786- 797.
doi: 10.1021/jm00106a046 |
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